Joe Win, Emilie Chanclud, C. Sarai Reyes-Avila, Thorsten Langner, Tofazzal Islam, & Sophien Kamoun.
Zenodo. http://doi.org/10.5281/zenodo.2564950
Please click on the accession numbers to download the sequences.
Summary statistics for sequencing runs
| M. oryzae isolate | Host | Source | Year collected | Reference | Flowcell ID | Run type | Basecaller | # Reads | Base count (Gbp) | Read N50 (bp) | ENA Accession |
|---|---|---|---|---|---|---|---|---|---|---|---|
| BTJP4-1 | Triticum aestivum | Jhenaidah, Bangladesh | 2016 | Islam et al., 2016 | FAH45397 | 1D | Albacore v2.1.10 | 464107 | 3.1 | 9437 | ERR2612748 |
| BTMP13-1 | Triticum aestivum | Meherpur, Bangladesh | 2016 | Islam et al., 2016 | FAH37911 | 1D | guppy v0.3.0 | 181812 | 1.4 | 25365 | ERR2612753 |
| BTGP1-b | Triticum aestivum | Meherpur, Bangladesh | 2017 | Islam et al., 2016 | FAH43895 | 1D | Albacore v2.1.10 | 158055 | 1.3 | 11213 | ERR2612754 |
| BTGP6-f | Triticum aestivum | Meherpur, Bangladesh | 2017 | Islam et al., 2016 | FAH43895 | 1D | Albacore v2.1.10 | 284212 | 1.9 | 9448 | ERR2612755 |
| BR32 | Triticum aestivum | Brazil | 1990 | Urashima et al., 1999 | FAH38591 | 1D | guppy v0.3.0 | 655377 | 5.5 | 11021 | ERR2612751 |
| FR13 | Oryza sativa | France | 1988 | Chiapello et al., 2015; Gladieux et al., 2018 | FAH37081 | 1D | guppy v0.5.1 | 1237702 | 8.1 | 10859 | ERR2612749 |
| US71 | Setaria italica | United States | 1998 | Chiapello et al., 2015; Gladieux et al., 2018 | FAH36864 | 1D | guppy v0.5.1 | 661505 | 4.9 | 10352 | ERR2612750 |
| CD156 | Eleusine indica | Ferkessedougou, Ivory Coast | 1989 | Chiapello et al., 2015; Gladieux et al., 2018 | FAH45397 | 1D | Albacore v2.1.10 | 566528 | 3.5 | 9234 | ERR2612752 |
Summary statistics for genome assemblies
| M. oryzae isolate | Host | CANU version | # Contigs | Assemby length (bp) | N25 (bp) | N50 (bp) | N75 (bp) | Max length (bp) | Mean length (bp) | Min length (bp) | GenBank Accession |
|---|---|---|---|---|---|---|---|---|---|---|---|
| BTJP4-1 | Triticum aestivum | 1.7 | 59 | 44506712 | 6840169 | 4344896 | 3373527 | 7174201 | 754351 | 13054 | GCA_900474225.2 |
| BTMP13-1 | Triticum aestivum | 1.6 | 16 | 43978087 | 7837192 | 6037509 | 4385994 | 10783101 | 2748630 | 7390 | GCA_900474375.2 |
| BTGP1-b | Triticum aestivum | 1.7 | 74 | 44406102 | 3690742 | 2814025 | 1269883 | 6505875 | 600082 | 5533 | GCA_900474635.2 |
| BTGP6-f | Triticum aestivum | 1.7 | 57 | 44234333 | 5243043 | 3705381 | 2027069 | 6048575 | 776041 | 8312 | GCA_900474435.2 |
| BR32 | Triticum aestivum | 1.6 | 21 | 41471325 | 11366628 | 5047693 | 3895412 | 11366628 | 1974825 | 18099 | GCA_900474545.2 |
| FR13 | Oryza sativa | 1.7 | 46 | 46415940 | 6634785 | 5357033 | 2121955 | 7257380 | 1009042 | 19712 | GCA_900474655.2 |
| US71 | Setaria italica | 1.7 | 84 | 45673611 | 3535243 | 2015667 | 979014 | 4788334 | 543733 | 6882 | GCA_900474175.2 |
| CD156 | Eleusine indica | 1.7 | 44 | 43859562 | 6040961 | 4257479 | 3430372 | 6066300 | 996808 | 8777 | GCA_900474475.2 |